Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9795203_9796249_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9795203 - 9796249

Intron Length:

1047

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGTG

5'SS Class:

strong_major

3'SS Sequence:

GCATGTTCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTGAA

U12 Branch Point Sequence:

GCATGTTCCACA

Flanking Amino Acid:

EKYISERVIPESNYGGKIPI

Intron Amino Acid Position:

283

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

76.2

39.9

Major BPS

63.2

0.33

1.1

55.1

42.1

Major PPT

67.9

0.4

60.7

40.1

Minor 5ss

34.9

-1.7

3.5

48.2

47.9

Minor BPS

40.8

-0.7

2.2

48.59

42.2

Associated Gene:

Gene:

TRPM8

Ensembl Gene ID:

ENSAPLG00000014898

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015666

9787598 - 9821830

34233