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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9802258_9803362_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9802258 - 9803362
Intron Length:
1105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTCAT
U12 Branch Point Sequence:
AGGAGCTTAGGT
Flanking Amino Acid:
SKDEMEIHISNECPITRHPL
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
59.3
0.23
1.4
63.4
44.3
Major PPT
89.5
0.89
0.6
87.9
22.1
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
42.1
-0.5
2.2
55.75
46

Associated Gene:

Gene:
TRPM8
Ensembl Gene ID:
ENSAPLG00000014898
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015666
9787598 - 9821830
34233