About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9803459_9804376_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9803459 - 9804376
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTTTACATGACT
Flanking Amino Acid:
KELSKVIWEQTRGCTLAALG
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
71
0.47
0.8
65.4
29.8
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
60.9
0.42
1.9
82.66
37.9

Associated Gene:

Gene:
TRPM8
Ensembl Gene ID:
ENSAPLG00000014898
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015666
9787598 - 9821830
34233