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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9804507_9806903_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9804507 - 9806903
Intron Length:
2397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTCTCCTTATTG
Flanking Amino Acid:
LANEYETRAVELFTECYSND
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
84.7
0.78
0.7
77
31.8
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
60.8
0.2
1.7
62.57
46

Associated Gene:

Gene:
TRPM8
Ensembl Gene ID:
ENSAPLG00000014898
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015666
9787598 - 9821830
34233