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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9808562_9811341_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9808562 - 9811341
Intron Length:
2780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGCAGC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ACTTTCTGATCT
Flanking Amino Acid:
FILLCDEVRQWYMNGSKYFL
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
60.8
44.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
40
-1.1
3.2
51.4
39.9
Minor BPS
57.3
0.31
1.7
74.74
42.1

Associated Gene:

Gene:
TRPM8
Ensembl Gene ID:
ENSAPLG00000014898
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015666
9787598 - 9821830
34233