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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9811434_9812414_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9811434 - 9812414
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTCTTCATTT
Flanking Amino Acid:
IFYFIAGIVFRLHSSDESSW
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.3
0.5
0.9
71
34.6
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
55.9
0.26
1.8
75.55
42.1

Associated Gene:

Gene:
TRPM8
Ensembl Gene ID:
ENSAPLG00000014898
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015666
9787598 - 9821830
34233