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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9812557_9812937_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9812557 - 9812937
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GCATACTGATGT
Flanking Amino Acid:
GPKIIMLQRMMIDVFFFLFL
Intron Amino Acid Position:
855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
75.7
34.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
86.6
0.82
0.7
84.4
30.5
Minor 5ss
41.4
-1
3.3
55.7
43.3
Minor BPS
42
-0.5
2
55.58
45.7

Associated Gene:

Gene:
TRPM8
Ensembl Gene ID:
ENSAPLG00000014898
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015666
9787598 - 9821830
34233