About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9813110_9813479_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9813110 - 9813479
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGCTATC
5'SS Class:
major
3'SS Sequence:
CTTGCCCCCTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
TTGCTCTCCACT
Flanking Amino Acid:
MFGQYPDDVDGTTYNFDRCT
Intron Amino Acid Position:
912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.2
68.8
42.2
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
51.5
0.03
1.6
62.2
34.7
Minor 5ss
44.6
-0.6
3
59.3
40.5
Minor BPS
49.7
0.06
2
73.18
43.7

Associated Gene:

Gene:
TRPM8
Ensembl Gene ID:
ENSAPLG00000014898
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015666
9787598 - 9821830
34233