About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9816283_9818411_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9816283 - 9818411
Intron Length:
2129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTAGG
5'SS Class:
major
3'SS Sequence:
ATACATTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
KNESKEPSICCSKNEDNETL
Intron Amino Acid Position:
1035

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
63.5
42.3
Major BPS
100
1.24
0.5
100
0
Major PPT
68.1
0.41
0.9
58.7
41.9
Minor 5ss
32.3
-2
2.7
39.4
40.3
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
TRPM8
Ensembl Gene ID:
ENSAPLG00000014898
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015666
9787598 - 9821830
34233