Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9853965_9856179_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9853965 - 9856179

Intron Length:

2215

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTATCTGTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTATTTTTATCT

Flanking Amino Acid:

TCDFKIGPFARTAFCRSVVE

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

75.4

34.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.1

0.72

0.9

76.9

Minor 5ss

33.5

-1.9

3.1

42.4

44.3

Minor BPS

61.7

0.45

1.6

75.72

41.5

Associated Gene:

Gene:

SPP2

Ensembl Gene ID:

ENSAPLG00000014858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015481

9852196 - 9858696

6501