Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9934_10543_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9934 - 10543

Intron Length:

610

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTGTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAA

U12 Branch Point Sequence:

TGTAACTAAAAT

Flanking Amino Acid:

NYMHQNGYIHRNIKASHILI

Intron Amino Acid Position:

183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

71.3

34.5

Major BPS

68.7

0.47

0.9

67.9

Major PPT

81.9

0.72

0.9

75.6

38.3

Minor 5ss

28.3

-2.5

3.5

37.3

47.4

Minor BPS

49.5

0.04

72.29

43.6

Associated Gene:

Gene:

STRADB

Ensembl Gene ID:

ENSAPLG00000014653

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048196

7561 - 14454

6894

ENSAPLT00000015296

7561 - 14454

6894