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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_99609_103982_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99609 - 103982
Intron Length:
4374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TGTGACTTAATC
Flanking Amino Acid:
LIIDCIGNDTDVLEETFRGL
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
89.4
0.89
0.7
88.2
29.1
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
64.4
0.43
1.6
72.11
39.1

Associated Gene:

Gene:
CFLAR
Ensembl Gene ID:
ENSAPLG00000015311
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015969
98022 - 111548
13527