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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1002758_1003066_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1002758 - 1003066
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
ATGTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AATGTATTAAAT
Flanking Amino Acid:
CRGHDCRKIICDKYKTGVID
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77
31.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
80.1
0.68
1
77.4
41.2
Minor 5ss
38.1
-1.3
3.3
50.7
41.2
Minor BPS
51.4
0.12
1.8
69.91
40.4

Associated Gene:

Gene:
DIPK1A
Ensembl Gene ID:
ENSAPLG00000016170
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016870
999015 - 1016397
17383