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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10039906_10040878_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10039906 - 10040878
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCTTCCTCACAC
Flanking Amino Acid:
TKQKYPEQPGRFAKLLLRLP
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.1
33.6
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
77.6
0.62
0.8
68.3
32
Minor 5ss
32.3
-2
3.3
44.3
43.6
Minor BPS
48.3
-0.1
2
59.51
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025060
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042629
10038784 - 10041303
2520