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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10074202_10074720_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10074202 - 10074720
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
CCTGCTTCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCAAC
U12 Branch Point Sequence:
ACCCCTCCAACA
Flanking Amino Acid:
MPGDHMHPYGAEPLFHDMD
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
49.8
-0
1.2
60
34.3
Major PPT
68.1
0.41
1
61.1
40.1
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
44.9
-0.3
1.8
52.03
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020021
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042376
10074171 - 10075881
1711