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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10098267_10106588_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10098267 - 10106588
Intron Length:
8322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
TCCCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TCGGTGCTGACA
Flanking Amino Acid:
SQMYSPQGISANGGWQDATT
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
69.9
36.1
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
74.6
0.55
0.7
69
24.8
Minor 5ss
34.8
-1.7
3
41.3
44.8
Minor BPS
40.2
-0.7
2.3
49.62
42.1

Associated Gene:

Gene:
PBX1
Ensembl Gene ID:
ENSAPLG00000030308
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033214
10096634 - 10207525
110892