Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10106679_10108145_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10106679 - 10108145

Intron Length:

1467

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGACC

5'SS Class:

strong_major

3'SS Sequence:

TTGGTCTGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

TCCCTCTAATTT

Flanking Amino Acid:

AQVGANVQSQVDTLRHVISQ

Intron Amino Acid Position:

371

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

34.7

Major BPS

82.2

0.8

0.9

81.6

Major PPT

71.3

0.48

41.4

Minor 5ss

32.1

-2

3.3

43.2

44.2

Minor BPS

45.8

-0.2

1.9

59.89

44.5

Associated Gene:

Gene:

PBX1

Ensembl Gene ID:

ENSAPLG00000030308

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033214

10096634 - 10207525

110892