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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10108259_10114799_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10108259 - 10114799
Intron Length:
6541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTTTT
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTTTCTGTGATT
Flanking Amino Acid:
ANSPSTPNSAGSSSSFNMSN
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
81.7
32.3
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
88.5
0.87
0.7
80.6
31.4
Minor 5ss
42.6
-0.8
2.8
57.1
41.4
Minor BPS
56.6
0.29
2
78.01
39.5

Associated Gene:

Gene:
PBX1
Ensembl Gene ID:
ENSAPLG00000030308
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033214
10096634 - 10207525
110892