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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10114960_10117803_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10114960 - 10117803
Intron Length:
2844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
AAACTCGCTCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TTCTCTCAAACT
Flanking Amino Acid:
AKKCGITVSQVSNWFGNKRI
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
58.6
0.19
1
48.2
40.5
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
56.9
0.29
2
80.09
42.2

Associated Gene:

Gene:
PBX1
Ensembl Gene ID:
ENSAPLG00000030308
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033214
10096634 - 10207525
110892