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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10117940_10118534_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10117940 - 10118534
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGTCG
5'SS Class:
major
3'SS Sequence:
TCTTCACCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTTCTTCACC
Flanking Amino Acid:
MILRSRFLDARRKRRNFNKQ
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.4
42.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
65.7
0.35
1
68.9
30.8
Minor 5ss
37.5
-1.4
3.2
48.8
46.9
Minor BPS
68.9
0.58
1.7
77.35
39.1

Associated Gene:

Gene:
PBX1
Ensembl Gene ID:
ENSAPLG00000030308
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033214
10096634 - 10207525
110892