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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10118726_10120578_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10118726 - 10120578
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGGC
5'SS Class:
major
3'SS Sequence:
CTTGCCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCGAT
U12 Branch Point Sequence:
TTTTCTTGCCCT
Flanking Amino Acid:
YHTELEKYEQACNEFTTHVM
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
64.2
40.9
Major BPS
68.7
0.46
1.3
66.4
42.2
Major PPT
74.8
0.56
0.8
65.5
36.1
Minor 5ss
36.3
-1.6
3.4
50.9
45.7
Minor BPS
42.9
-0.4
3.6
80.32
41.9

Associated Gene:

Gene:
PBX1
Ensembl Gene ID:
ENSAPLG00000030308
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033214
10096634 - 10207525
110892