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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10204665_10207157_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10204665 - 10207157
Intron Length:
2493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ACGTCCTAACCT
Flanking Amino Acid:
TDQSLDEAQARKHALNCHRM
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
72
0.55
1
71.8
31.4
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
29.9
-2.3
3.4
41
45.6
Minor BPS
52.4
0.15
2
69.62
47.3

Associated Gene:

Gene:
PBX1
Ensembl Gene ID:
ENSAPLG00000030308
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033214
10096634 - 10207525
110892