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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10271825_10275032_R

Intron Information:

Intron Rank:
132186
Intron Class:
major
Intron Phase:
Intron Coordinates:
10271825 - 10275032
Intron Length:
3208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
66.6
39.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.7
0.74
0.9
77.1
36
Minor 5ss
27.1
-2.6
3
26.2
36.9
Minor BPS
78.3
0.97
1.3
91.5
30.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018390
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027788
10271730 - 10300427
28698