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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10271825_10281419_R

Intron Information:

Intron Rank:
132180
Intron Class:
major
Intron Phase:
Intron Coordinates:
10271825 - 10281419
Intron Length:
9595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
77.9
36.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.7
0.74
0.9
77.1
36
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
78.3
0.97
1.3
91.5
30.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018390
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021917
10271637 - 10283043
11407