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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10282549_10299833_R

Intron Information:

Intron Rank:
132189
Intron Class:
major
Intron Phase:
Intron Coordinates:
10282549 - 10299833
Intron Length:
17285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCATGTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
CTCATTATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
73.6
0.53
0.9
67.2
37.9
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
49.3
-0
1.7
58.91
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018390
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027788
10271730 - 10300427
28698