Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10286224_10299833_R

Intron Information:

Intron Rank:

132182

Intron Class:

major

Intron Phase:

Intron Coordinates:

10286224 - 10299833

Intron Length:

13610

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAAAT

5'SS Class:

strong_major

3'SS Sequence:

TGTTCCCCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTCTAC

U12 Branch Point Sequence:

GCTGCTCTACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

80.7

33.7

Major BPS

43.5

-0.4

1.4

38.1

41.1

Major PPT

76.6

0.6

0.8

70.9

30.3

Minor 5ss

33.7

-1.9

3.3

47.7

Minor BPS

46.5

-0.1

64.66

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022394

10285073 - 10325362

40290