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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10299934_10308785_R

Intron Information:

Intron Rank:
132183
Intron Class:
major
Intron Phase:
Intron Coordinates:
10299934 - 10308785
Intron Length:
8852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAA
U12 Branch Point Sequence:
TGAACTCTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
60.3
0.26
1.2
51.7
43.9
Major PPT
82
0.72
0.7
79.9
25.4
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
47.4
-0.1
2
67.22
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018390
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022394
10285073 - 10325362
40290