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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10308939_10314863_R

Intron Information:

Intron Rank:
132184
Intron Class:
major
Intron Phase:
Intron Coordinates:
10308939 - 10314863
Intron Length:
5925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTAAATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTGTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.9
0.54
1
67.3
42
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
62
0.45
1.5
75.95
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018390
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022394
10285073 - 10325362
40290