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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10314985_10325143_R

Intron Information:

Intron Rank:
132185
Intron Class:
major
Intron Phase:
Intron Coordinates:
10314985 - 10325143
Intron Length:
10159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTACTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTTTCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
83.3
0.75
0.8
79
34.3
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
59.9
0.39
1.8
83.62
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018390
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022394
10285073 - 10325362
40290