Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10326647_10331739_R

Intron Information:

Intron Rank:

154530

Intron Class:

major

Intron Phase:

Intron Coordinates:

10326647 - 10331739

Intron Length:

5093

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAA

U12 Branch Point Sequence:

ATTTCCTAAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.8

77.7

30.1

Major BPS

72.7

0.57

72.1

31.1

Major PPT

0.85

0.8

80.2

37.3

Minor 5ss

27.6

-2.6

3.3

39.2

46.2

Minor BPS

68.2

0.57

1.7

79.26

36.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030680

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033186

10325939 - 10332121

6183