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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10358431_10358894_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10358431 - 10358894
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TAAGTTTGAATT
Flanking Amino Acid:
NAEKEEMKAKEIYLNLKAGL
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
33.3
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
82.7
0.74
0.7
76.9
31.8
Minor 5ss
38.2
-1.3
3
49.5
41.2
Minor BPS
51.6
0.13
1.5
66.09
39

Associated Gene:

Gene:
NUF2
Ensembl Gene ID:
ENSAPLG00000007357
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007697
10358104 - 10370563
12460