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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10362842_10363533_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10362842 - 10363533
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCGTGAAAACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
TTGTCGTGAAAA
Flanking Amino Acid:
SDITERTRKLNELKVTMATL
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
50.2
0.01
1
42.4
41.4
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
50.2
0
2.3
69.63
42.4

Associated Gene:

Gene:
NUF2
Ensembl Gene ID:
ENSAPLG00000007357
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007697
10358104 - 10370563
12460