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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10364457_10366157_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10364457 - 10366157
Intron Length:
1701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
ACACCTTTATTT
Flanking Amino Acid:
QEAAVKLEKLNTVPVEQQAE
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
76.8
0.67
1
66
40.9
Major PPT
81.6
0.71
0.9
81.7
35.4
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
52.1
0.15
1.6
64.31
40.6

Associated Gene:

Gene:
NUF2
Ensembl Gene ID:
ENSAPLG00000007357
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007697
10358104 - 10370563
12460