About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10367857_10368577_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10367857 - 10368577
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAAAAT
U12 Branch Point Sequence:
GTTTCCTTACAG
Flanking Amino Acid:
FLPVCNLYIHMERFLPVCRV
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
55.4
0.14
1.3
61.7
41.5
Major PPT
86.8
0.83
0.8
80.7
31.5
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
63.1
0.27
1.8
69.63
43.2

Associated Gene:

Gene:
NUF2
Ensembl Gene ID:
ENSAPLG00000007357
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007697
10358104 - 10370563
12460