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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10368655_10370202_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10368655 - 10370202
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
CTTTATTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GACTCTTTATTC
Flanking Amino Acid:
YGIRLEHFYMMPVNVEIMYP
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.6
39.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
87.1
0.84
0.7
84.9
29.5
Minor 5ss
42.3
-0.8
2.5
51.2
40.6
Minor BPS
55.3
0.15
1.6
59.77
39.9

Associated Gene:

Gene:
NUF2
Ensembl Gene ID:
ENSAPLG00000007357
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007697
10358104 - 10370563
12460