About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10382432_10382982_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10382432 - 10382982
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCTG
5'SS Class:
major
3'SS Sequence:
TCTTTCCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTGGAA
U12 Branch Point Sequence:
TCGGGCTGAGTT
Flanking Amino Acid:
KFGLAGGVFTRDIQKAHRVV
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
57.8
46.6
Major BPS
41.8
-0.5
1.5
34.8
43.8
Major PPT
85.3
0.79
0.7
80.7
24.5
Minor 5ss
32.6
-2
3.7
46.8
48.5
Minor BPS
42
-0.5
2.1
55.95
46.8

Associated Gene:

Gene:
ALDH9A1
Ensembl Gene ID:
ENSAPLG00000008067
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008402
10381910 - 10387576
5667