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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10383125_10383298_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10383125 - 10383298
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GGTGCCTGAATT
Flanking Amino Acid:
NGFYMRPCVLGNCTDDMTCV
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.6
0.67
0.9
72.9
37.4
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
61.8
0.45
1.6
74.64
42

Associated Gene:

Gene:
ALDH9A1
Ensembl Gene ID:
ENSAPLG00000008067
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008402
10381910 - 10387576
5667