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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10383809_10384145_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10383809 - 10384145
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAG
U12 Branch Point Sequence:
TTGTTGTCAGCA
Flanking Amino Acid:
LMANFLTQGEVCCNGTRVFV
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66.8
39.3
Major BPS
60.9
0.27
1.7
71.4
45.1
Major PPT
80.9
0.7
0.9
72.5
42.4
Minor 5ss
26.5
-2.7
3.2
34.9
41.5
Minor BPS
45.1
-0.3
2.3
62.88
43.7

Associated Gene:

Gene:
ALDH9A1
Ensembl Gene ID:
ENSAPLG00000008067
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008402
10381910 - 10387576
5667