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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10385742_10386758_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10385742 - 10386758
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTCGG
5'SS Class:
major
3'SS Sequence:
GTGCCCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTTCTCTGATGT
Flanking Amino Acid:
VLLEAARIIREQRDEIATLE
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
56.2
48.1
Major BPS
79
0.72
1
69
38.9
Major PPT
68.7
0.42
0.9
61
35.2
Minor 5ss
39.3
-1.2
2.7
41.1
45.2
Minor BPS
45.9
-0.2
2
65.56
45

Associated Gene:

Gene:
ALDH9A1
Ensembl Gene ID:
ENSAPLG00000008067
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008402
10381910 - 10387576
5667