Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10386905_10387392_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10386905 - 10387392

Intron Length:

488

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGACA

5'SS Class:

major

3'SS Sequence:

AAAATGTGCCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TCCTGCTTAAAA

Flanking Amino Acid:

QVEEVYEPATGRVIAKLLCS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

68.4

38.2

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

53.5

0.08

1.1

43.1

46.4

Minor 5ss

25.7

-2.8

3.1

31.1

42.7

Minor BPS

0.28

1.9

68.09

44.4

Associated Gene:

Gene:

ALDH9A1

Ensembl Gene ID:

ENSAPLG00000008067

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008402

10381910 - 10387576

5667