About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10394995_10398429_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10394995 - 10398429
Intron Length:
3435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATGATCT
Flanking Amino Acid:
FTALMGMFNSIFDGRVVAKL
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
94.5
1
0.6
88
29.4
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
49.8
0.07
2
75.25
40.9

Associated Gene:

Gene:
TMCO1
Ensembl Gene ID:
ENSAPLG00000008558
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008894
10389467 - 10406109
16643
ENSAPLT00000019610
10389467 - 10398584
9118