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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10398498_10398572_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10398498 - 10398572
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCCTCTTCT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATCTCTGACC
Flanking Amino Acid:
MLYKVRMKSMFAIG
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.5
0.06
1.3
55.6
43.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
87.2
0.84
0.7
81.7
29
Minor 5ss
41.3
-1
3.8
59.3
39.4
Minor BPS
57.3
0.21
1.7
67
38.9

Associated Gene:

Gene:
TMCO1
Ensembl Gene ID:
ENSAPLG00000008558
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019610
10389467 - 10398584
9118