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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10399148_10402510_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10399148 - 10402510
Intron Length:
3363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CTGATGATAACT
Flanking Amino Acid:
SAGRQQKKKIERQEEKLKNN
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
86.2
0.81
0.8
77.7
36.7
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
44.9
-0.3
2.3
64.76
45.7

Associated Gene:

Gene:
TMCO1
Ensembl Gene ID:
ENSAPLG00000008558
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008894
10389467 - 10406109
16643