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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10402571_10405942_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10402571 - 10405942
Intron Length:
3372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGCATTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTCTTTGCATT
Flanking Amino Acid:
KAEVEKQSKKLEKKKETITE
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
81.9
0.72
0.9
76.3
37.6
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
48.7
-0
1.8
73.39
38.1

Associated Gene:

Gene:
TMCO1
Ensembl Gene ID:
ENSAPLG00000008558
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008894
10389467 - 10406109
16643