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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10421813_10424494_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10421813 - 10424494
Intron Length:
2682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TGTGCTTTATGC
Flanking Amino Acid:
TDADTRLSRRVLRDISERGR
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
76.2
0.59
0.7
73.5
24.8
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
48.9
-0.1
2
62.32
43.6

Associated Gene:

Gene:
UCK2
Ensembl Gene ID:
ENSAPLG00000018550
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023742
10411794 - 10428523
16730
ENSAPLT00000020198
10419771 - 10428523
8753
ENSAPLT00000044768
10411794 - 10428523
16730