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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10424593_10426185_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10424593 - 10426185
Intron Length:
1593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTCCTTGTAACA
Flanking Amino Acid:
KPAFEEFCLPTKKYADVIIP
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.7
40.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
87.1
0.83
0.7
80.3
31.7
Minor 5ss
36.5
-1.5
2.7
44.8
42.5
Minor BPS
52.1
0.06
2
67.58
39.4

Associated Gene:

Gene:
UCK2
Ensembl Gene ID:
ENSAPLG00000018550
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023742
10411794 - 10428523
16730
ENSAPLT00000020198
10419771 - 10428523
8753
ENSAPLT00000044768
10411794 - 10428523
16730