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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10426235_10426740_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10426235 - 10426740
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACACAAC
U12 Branch Point Sequence:
TCTCCCTCCCTT
Flanking Amino Acid:
VIIPRGADNEVAINLIVQHI
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
43.6
-0.4
1.2
44.8
33.5
Major PPT
78.2
0.64
0.8
72.5
32.2
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
37
-0.9
3.6
65.16
45.7

Associated Gene:

Gene:
UCK2
Ensembl Gene ID:
ENSAPLG00000018550
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044768
10411794 - 10428523
16730
ENSAPLT00000023742
10411794 - 10428523
16730
ENSAPLT00000020198
10419771 - 10428523
8753