About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1044089_1044431_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1044089 - 1044431
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGGCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTTGTAAACT
Flanking Amino Acid:
RQCVFATTTKRGGALKKGPN
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76
34.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.2
0.54
1
73.1
41.8
Minor 5ss
40.4
-1.1
2.9
53.8
43.4
Minor BPS
52.8
0.16
2.4
78.66
44.1

Associated Gene:

Gene:
MTF2
Ensembl Gene ID:
ENSAPLG00000016259
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016983
1032202 - 1056108
23907