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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10451119_10451502_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10451119 - 10451502
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTCCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
ATTGCTGTGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
78.5
30.2
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
79.6
0.67
0.9
73.2
37.3
Minor 5ss
36.7
-1.5
2.5
43
44
Minor BPS
49.9
-0
2.1
67.9
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008931
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009322
10448337 - 10454087
5751