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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10451687_10452820_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10451687 - 10452820
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GGTGTTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGACAA
U12 Branch Point Sequence:
AGACAAACAACT
Flanking Amino Acid:
DGSSYLNSVERYDPKTNQWS
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.8
38.5
Major BPS
50.6
0.02
1.2
59
38
Major PPT
74.4
0.55
0.9
65.8
45.3
Minor 5ss
38.8
-1.3
3.4
58.1
46.5
Minor BPS
38.8
-0.7
2
54.35
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008931
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009322
10448337 - 10454087
5751